Welcome to Faster-LMM-D’s documentation!

Contents:

Authors

• Prasun Anand
• Pjotr Prins

Installation

Install the package with pip:

$ pip install read-the-docs-template

Faster-LMM-D

A faster lmm for GWAS. It has multi-core and GPU support.

Usage:

Features

• LD Pruning
• Kinship Calculation
• Linear Regression
• Logistic Regression
• Linear Mixed Models
• Multivariate Linear Mixed Models (WIP)
• Supports CUDA/OpenCL and Multi-core CPUs

Installation

Install faster_lmm_d by running:

Contribute

• Issue Tracker: https://github.com/genetics-statistics/faster_lmm_d/issues
• Source Code: https://github.com/genetics-statistics/faster_lmm_d

Support

If you are having issues, please let us know.

License

This software is distributed under the GPL3 license.

Tutorials

Linear Regression

Run Wald Test and Score Test

Logistic Regression

Binary Traits

Univariate Linear Mixed Models

Single Phenotype

1. Brent’s Method
2. Newton Rhapson’s Method(Exact)

Multivariate Linear Mixed Models

Multiple Phenotype

Ipython Notebook

Usage

To use this template, simply update it:

import read-the-docs-template

Indices and tables

• Index
• Module Index
• Search Page